../../tmp/servers/virsirnadb/361720732
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2219 | 3 | tacccagaaatttgggcg | 20 | |
| D28917.1 | HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g | 214 | .................. | 231 | 90 |
| X76918.1 | Hepatitis C virus genes for core, envelope and NS1 proteins | 173 | .................. | 190 | 90 |
| AF046866.1 | Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds | 214 | .................. | 231 | 90 |
| GQ275355.1 | Hepatitis C virus subtype 3a, complete genome | 214 | .................. | 231 | 90 |
| D17763.1 | HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome | 214 | .................. | 231 | 90 |
| FJ025854.1 | Hepatitis C virus strain P026 polyprotein gene, complete cds | 65 | .....g............ | 82 | 85 |
| FJ407092.1 | Hepatitis C virus isolate IND-HCV-3i, complete genome | 215 | .....g............ | 232 | 85 |
| D49374.1 | HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome | 214 | .g...g............ | 231 | 80 |
| D63821.1 | HPCJK049E1 Hepatitis C virus (isolate JK049) genomic RNA, complete gen | 214 | .g...g............ | 231 | 80 |
| DQ418782.1 | Hepatitis C virus subtype 4a isolate 01-09 polyprotein gene, complete | 129 | .g...g............ | 146 | 80 |
| DQ418783.1 | Hepatitis C virus subtype 4a isolate 02-42 polyprotein gene, complete | 94 | .g...g............ | 111 | 80 |
| DQ418785.1 | Hepatitis C virus isolate 02Q polyprotein gene, partial cds | 137 | .g...g............ | 154 | 80 |
| DQ418786.1 | Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete | 109 | .g...g............ | 126 | 80 |
| DQ418787.1 | Hepatitis C virus subtype 4a isolate F753 polyprotein gene, complete | 137 | .g...g............ | 154 | 80 |
| DQ418788.1 | Hepatitis C virus subtype 4a isolate F7157 polyprotein gene, complete | 137 | .g...g............ | 154 | 80 |
| DQ418789.1 | Hepatitis C virus subtype 4a isolate L835 polyprotein gene, complete | 136 | .g...g............ | 153 | 80 |
| DQ516083.1 | Hepatitis C virus subtype 4d isolate 24 polyprotein gene, complete cd | 154 | .g...g............ | 171 | 80 |
| DQ516084.1 | Hepatitis C virus subtype 4a isolate 25 polyprotein gene, complete cd | 154 | .g...g............ | 171 | 80 |
| DQ988073.1 | Hepatitis C virus isolate Eg2 polyprotein gene, partial cds | 134 | .g...g............ | 151 | 80 |
| DQ988074.1 | Hepatitis C virus isolate Eg3 polyprotein gene, partial cds | 134 | .g...g............ | 151 | 80 |
| DQ988075.1 | Hepatitis C virus isolate Eg4 polyprotein gene, partial cds | 134 | .g...g............ | 151 | 80 |
| DQ988076.1 | Hepatitis C virus isolate Eg7 polyprotein gene, partial cds | 134 | .g...g............ | 151 | 80 |
| DQ988077.1 | Hepatitis C virus isolate Eg9 polyprotein gene, partial cds | 135 | .g...g............ | 152 | 80 |
| DQ988078.1 | Hepatitis C virus isolate Eg10 polyprotein gene, partial cds | 130 | .g...g............ | 147 | 80 |
| DQ988079.1 | Hepatitis C virus isolate Eg12 polyprotein gene, partial cds | 134 | .g...g............ | 151 | 80 |
| FJ025855.1 | Hepatitis C virus strain P212 polyprotein gene, complete cds | 65 | .g...g............ | 82 | 80 |
| FJ025856.1 | Hepatitis C virus strain P245 polyprotein gene, complete cds | 65 | .g...g............ | 82 | 80 |
| FJ462431.1 | Hepatitis C virus isolate QC139, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ462434.1 | Hepatitis C virus isolate QC262, complete genome | 216 | .g...g............ | 233 | 80 |
| FJ462435.1 | Hepatitis C virus isolate QC264, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ462436.1 | Hepatitis C virus isolate QC381, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ462437.1 | Hepatitis C virus isolate QC382, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ462438.1 | Hepatitis C virus isolate QC383, complete genome | 216 | .g...g............ | 233 | 80 |
| FJ462441.1 | Hepatitis C virus isolate QC97, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ839869.1 | Hepatitis C virus isolate QC155, complete genome | 215 | .g...g............ | 232 | 80 |
| FJ839870.1 | Hepatitis C virus isolate QC274, complete genome | 215 | .g...g............ | 232 | 80 |
| Y11604.1 | Hepatitis C virus type 4a RNA for HCV polyprotein | 154 | .g...g............ | 171 | 80 |
| AF064490.1 | Hepatitis C virus (isolate SA13) polyprotein gene, complete cds | 121 | .g...g..g......... | 138 | 75 |
| DQ418784.1 | Hepatitis C virus subtype 4a isolate 02C polyprotein gene, complete c | 139 | .g.t.g............ | 156 | 75 |
| EF589160.1 | Hepatitis C virus subtype 4f strain IFBT84 polyprotein gene, partial | 150 | .g...g..g......... | 167 | 75 |
| EF589161.1 | Hepatitis C virus subtype 4f strain IFBT88 polyprotein gene, partial | 149 | .g...g..g......... | 166 | 75 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 188 | .g..tg............ | 205 | 75 |
| FJ462432.1 | Hepatitis C virus isolate QC193, complete genome | 216 | .g...g.c.......... | 233 | 75 |
| FJ462433.1 | Hepatitis C virus isolate QC249, complete genome | 216 | .g..tg............ | 233 | 75 |
| FJ462439.1 | Hepatitis C virus isolate QC384, complete genome | 215 | .g..tg............ | 232 | 75 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 216 | .g...g.c.......... | 233 | 75 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 188 | .g.....cc......... | 205 | 75 |
| Y13184.1 | Hepatitis C virus genotype 5a RNA for HCV polyprotein TTCACGCAGAAAGCG | 154 | .g...g..g......... | 171 | 75 |
| EU798761.1 | Hepatitis C virus subtype 6v isolate KM046 polyprotein precursor, gen | 6423 | ___....t........._ | 6410 | 65 |